PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g010470.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 685aa    MW: 75543.2 Da    PI: 7.8354
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g010470.2genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3581.7e-18193292198
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+kvl+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e++
  Csa10g010470.2 193 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLKIQDIKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRTE-PEGK 285
                     99**************************555566778***************9989999999***9.********************654.7777 PP

                     .EEEEE- CS
              B3  92 lvvkvfr 98 
                     lv++ ++
  Csa10g010470.2 286 LVMGYRK 292
                     7777665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.5E-30188297IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.45E-20190293IPR015300DNA-binding pseudobarrel domain
CDDcd100171.23E-22191292No hitNo description
SMARTSM010194.9E-20193293IPR003340B3 DNA binding domain
PfamPF023621.1E-15193292IPR003340B3 DNA binding domain
PROSITE profilePS5086311.053193294IPR003340B3 DNA binding domain
PROSITE profilePS5105014.8422472IPR011124Zinc finger, CW-type
PfamPF074963.2E-13427469IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MLSLLQNVSQ ESNGRDLSSF ASPEHVGSVL ERTNLKHLLH FQRIGSTQSS LQMKQEESLL  60
PSRLDALRHK TERKELQELS AQPNLSISLG PTLMSSPFHD AVVDDRSKAT SIFQLAPRSR  120
QLLPKPANSA PTAAGMEPNG SLVSQIHVAR PPPEGRGKTQ LLPRYWPRIT DQELQQLSGQ  180
YPHLSNSKII PLFEKVLSAS DAGRIGRLVL PKACAEAYFP PISQPEGLPL KIQDIKGKEW  240
VFQFRFWPNN NSRMYVLEGV TPCIQSMQLQ AGDTVTFSRT EPEGKLVMGY RKATNSTATQ  300
MFKGSNEPNL NMFSNNLNPG CGDINWSKLE KTEDMGKDNL FLQSSLTSAR KRVRNIGTKS  360
KRLLIDSVDV LELKVTWDEA QELLRPPQSA KPSIVTLEDQ DFEEYDEPPV FGKKTVFVSR  420
QTGEQEQWVQ CDACGKWRRL PVDTLLPPKW LCSDNLLDPA RSSCSAPDEL SPREHDTLVR  480
QSKEFKRRRM ASTNEKLNQA QEASAAETLA NAGITTTGEQ GEIAVAATTK HPRHRAGCSC  540
IVCSQPPSGK GKHKPTCTCT VCEAVKRRFR TLMMRKRSRG EAGQASQQAQ SESRDETEVE  600
SIPAVEPAAG ENIDLNSDPG ASRVSMMSLL QAAAFPLEAY LKQKAVSNTA GEQQSSDMVS  660
TEHGSSSAAQ EQDKDTNGAQ EPVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-1419229613120DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2065540.0AB206554.1 Arabidopsis thaliana HSI2-L1 mRNA for transcription factor B3-EAR motif family, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010432785.10.0PREDICTED: B3 domain-containing transcription repressor VAL2-like isoform X1
RefseqXP_010432784.10.0PREDICTED: B3 domain-containing transcription repressor VAL2-like isoform X1
RefseqXP_010432783.10.0PREDICTED: B3 domain-containing transcription repressor VAL2-like isoform X1
SwissprotQ5CCK40.0VAL2_ARATH; B3 domain-containing transcription repressor VAL2
TrEMBLR0F3W50.0R0F3W5_9BRAS; Uncharacterized protein
STRINGscaffold_700997.10.0(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1